PIPages
Labs

Mark Siemens

University of Denver, CO·Physics

Light can probe matter in ways nothing else can. But it has limits.

Fields

Physics

Biomedical Engineering

Neuroscience

Topics

super-resolution microscopy

single-molecule localization microscopy

multiphoton microscopy

Grants
2 known grants, through Jul 2029

What they work on

  1. Develop DeepSpiral, a super-resolution microscope that combines multiphoton excitation with single-molecule localization microscopy to image molecules at the nanometer scale up to 300 microns deep in living brain tissue.
  2. Use a dynamically structured, low-power illumination beam in DeepSpiral to achieve super-resolution while limiting tissue heating, and apply it to how brain structures change during learning.
  3. Build and optimize the first quantum stimulated Raman spectroscopy (QSRS) setup, using entangled photon pairs from spontaneous parametric downconversion, and measure how much entanglement enhances the signal.
  4. Apply QSRS terahertz spectroscopy to quantum materials, measuring phonons (crystal vibrations), metal-insulator transitions, 2D heterostructure electron states, single magnons and lipids in tissue.

More about the research

Inside thick tissue it scatters and blurs, and with ordinary light the weakest signals from matter are hard to detect. Two projects push past these limits with new optical techniques. One sees single molecules deep inside living brain tissue. The other uses quantum-entangled light to sense tiny vibrations in materials with far greater sensitivity.

Why it matters

Deep super-resolution imaging could reveal how the brain's molecular structures change during learning and memory. It could also be used to inspect layered computer chips and 2D materials. Quantum Raman sensing could enable non-destructive testing in the semiconductor industry, chemical and weapons detection, and quantum information technology. Because it can sense lipids in tissue, it could also help with cancer diagnostics and screening.

Known grants

From NIH and NSF research grants. Labs often have other funding we can't see.

Collaborative Research: Two-photon DeepSpiral super-resolution imaging of in vivo molecular dynamics in deep tissue

NSF · Aug 2026 – Jul 2029

Quantum Stimulated Raman Spectroscopy and Sensing

NSF · Jan 2026 – Dec 2028

Closest labs

Sheng Liu

Clemson University, SC·Biophysics

Build a two-color, high-speed single-particle tracking microscope based on real-time tracking methods like MINFLUX, which can follow two different molecules at once with high spatial and time resolution.

Ajay Ram Srimath Kandada

Wake Forest University, NC·Physics·Early-career

Measure how excitons couple to lattice vibrations in 2D metal halide perovskites by recording noise in the amplitude and phase of the optical response after launching coherent phonons, to isolate how random lattice fluctuations drive anharmonicity and polaron formation.

Shaul Mukamel

University of California-Irvine, CA·Chemistry

Develop models and computational tools to predict and interpret spectroscopy signals made with entangled photons, combining electronic structure and quantum dynamics simulations.

The school

University of Denver: 4 labs on PI Pages, $56M a year on research, 138 research doctorates a year.

More about University of Denver

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