PIPages
Labs

Zhiying Wang

University of California-Irvine, CA·Engineering·Early-career

DNA can pack enormous amounts of data into a tiny, long-lasting molecule, which makes it attractive for storing digital information. Writing data into DNA is expensive, though.

Fields

Engineering

Computer Science

Mathematics & Statistics

Topics

DNA data storage

composite DNA

coding theory

Grants
1 known grant, through Jan 2028

What they work on

  1. Establish the fundamental limit on information density for composite DNA storage, where each position is a set mixture of A, C, G and T, and design coding schemes that reach it given symbol choice and storage-channel errors.
  2. Develop information-theoretic security schemes for composite DNA storage, including methods where secret data can be decoded only by reading mixed strands from multiple storage vessels.
  3. Devise methods to identify a target composite DNA strand within a vessel holding many strands, and verify the coding schemes through software simulation and experiments.

More about the research

Synthesizing DNA costs about $0.10 per nucleotide position. Because standard storage uses one of the four bases (A, C, G or T) per position, that works out to at least $0.05 per bit. Composite DNA storage offers a cheaper route. Each position holds a mixture of all four bases across many copies of a strand, in set proportions. This raises information density and could cut cost per bit by several orders of magnitude.

Why it matters

Cheap, dense DNA storage could help with the growing need for long-term data storage. By lowering the cost per bit of writing data into DNA and adding reliability and security guarantees, this coding work could move DNA storage closer to wide use in a broad range of applications.

Known grants

From NIH and NSF research grants. Labs often have other funding we can't see.

CAREER: Coding for Composite DNA Storage

NSF · Feb 2023 – Jan 2028

Closest labs

Dana Dachman-Soled

University of Maryland, MD·Computer Science

Construct deterministic randomness extractors, which turn imperfect random sources into high-quality random bits, for efficiently samplable weak sources, including low-entropy classical and quantum sources and sources subject to leakage.

Hessam Mahdavifar

Northeastern University, MA·Engineering·Early-career

Generalize Plotkin Transform codes, the family containing Reed–Muller and polar codes, through nonlinear parameterizations, and search for new codes using machine learning, deep learning and gradient-descent optimization.

Paul Valiant

Purdue University, IN·Computer Science

Design error-correcting codes that withstand random or adversarial insertion and deletion errors while supporting local decoding, which recovers part of a message by reading only a small piece of the stored data.

The school

University of California-Irvine: 46 labs on PI Pages, $645M a year on research, 524 research doctorates a year.

More about University of California-Irvine

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