PIPages
Labs

Brian T. Cunningham

University of Illinois Urbana-Champaign, IL·Biomedical Engineering

Finding a single molecule in a drop of blood or water normally takes a big laboratory machine and trained staff. The work here aims to shrink that capability into cheap, compact instruments that can count individual molecules one at a time.

Fields

Biomedical Engineering

Engineering

Materials Science

Topics

photonic crystal

biosensor

quantum dots

Grants
5 known grants, through Aug 2030

What they work on

  1. Fabricate assemblies of metal nanoparticles and nanodiamonds, diamond particles with light-emitting atomic defects, and couple them to photonic crystals that amplify both excitation and emission for single-molecule counting.
  2. Tune nanodiamond emission color through doping strategies that create specific quantum defects, so that several different target molecules can be distinguished at once by their color.
  3. Build imaging instruments that operate in both digital-counting and spectroscopic modes, enabling single-molecule measurements with an inexpensive light microscope rather than laboratory equipment.
  4. Design and synthesize quantum dot tags with engineered multispectral brightness and tunable photonic-crystal enhancement, aiming to distinguish up to 45 distinct labels in one blood droplet.
  5. Test a scheme in which each target biomarker generates multiple downstream quantum-dot detection events, pushing detection limits lower in single-step, room-temperature, enzyme-free assays.
  6. Develop a microfluidic cartridge that extracts nucleic acids from 100 microliters of whole blood and uses virus-specific CRISPR/Cas activation to release gold nanoparticle reporters for HIV, HBV and HCV.
  7. Validate the crumpled-graphene impedance biosensor and handheld reader on clinical whole-blood specimens from hospital collaborators, benchmarking detection limits against spiked samples.
  8. Conduct human factors engineering and acceptability research with behavioral scientists and a scientific advisory group so the triple viral load test matches the needs of clinicians, health workers and end users.
  9. Apply the Activate, Cleave, Capture, and Count assay to six cancer mutations including KRAS in calibration standards and banked human plasma, using photonic crystal biosensor microscopy to count released gold nanoparticles.
  10. Compare the sensitivity, selectivity and repeatability of digital-resolution circulating tumor DNA counting against droplet digital PCR, the current laboratory standard.

More about the research

The common thread is engineered light: surfaces called photonic crystals, which are patterned films that trap and concentrate light, are paired with bright nanoparticle tags so that each captured target molecule becomes a countable spot of light or an electrical signal. Across projects, the same toolkit is aimed at infections, cancer DNA in blood, and general biomarker panels, with the goal of tests that work in clinics rather than only in central labs.

Why it matters

Sensitive molecular testing today usually requires central labs, which delays treatment decisions and excludes people without easy access to hospitals. These projects could yield inexpensive handheld tests that monitor HIV, hepatitis B and hepatitis C viral loads from a drop of blood in community settings, and point-of-care liquid biopsies that help oncologists pick targeted therapies or watch for cancer recurrence during an office visit. The same photonic tools could support broader health, food and water monitoring.

Known grants

From NIH and NSF research grants. Labs often have other funding we can't see.

Human factors-designed triple test for HIV, HBV, and HCV infection in whole blood using target amplification, signal amplification, and crumpled graphene biosensor readout

NIH · Sep 2025 – Aug 2030

Plasmonic nano-assemblies with fluorescent nanodiamonds and photonic metamaterial enhancement for spectroscopic digital-resolution detection of biomolecules

NSF · Aug 2026 – Jul 2029

Cancer Technology and Data Science

NIH · Apr 2026 – Mar 2029

Closest labs

Weihua Guan

Indiana University, IN·Biomedical Engineering·Early-career

Develop a single-tube multiplex recombinase polymerase amplification (RPA) assay that copies several respiratory pathogen targets at once with balanced amplification and minimal cross-reactivity.

Pietro Strobbia

University of Cincinnati, OH·Chemistry

Identify which functional DNA sequence features control the performance of catalytic surface-enhanced Raman scattering (SERS) sensors, using inverse design and machine learning.

MinJun Kim

Southern Methodist University, TX·Biomedical Engineering

Characterize how single adeno-associated virus (AAV) capsids filled with single-stranded DNA, double-stranded DNA, or nothing deform as voltage pushes them through solid-state nanopores, with automated recapture for repeated measurements.

The school

University of Illinois Urbana-Champaign: 41 labs on PI Pages, $907M a year on research, 870 research doctorates a year.

More about University of Illinois Urbana-Champaign

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